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2007-12-15

1_2_0_released*[Release] BioRuby 1.2.0 released

1_2_0_released*[Release] BioRuby 1.2.0 released - "aac".translate #=> "N" を含むブックマーク はてなブックマーク - 1_2_0_released*[Release] BioRuby 1.2.0 released - "aac".translate #=> "N" 1_2_0_released*[Release] BioRuby 1.2.0 released - "aac".translate #=> "N" のブックマークコメント

BioRuby 1.2.0 released.

2007-12-15 Toshiaki Katayama <k@bioruby.org>

* BioRuby 1.2.0 released

* BioRuby shell is improved

* file save functionality is fixed

* deprecated require_gem is changed to gem to suppress warnings

* deprecated end_form_tag is rewrited to suppress warnings

* images for Rails shell are separated to the bioruby directory

* spinner is shown during the evaluation

* background image in the textarea is removed for the visibility

* Bio::Blast is fixed to parse -m 8 formatted result correctly

* Bio::PubMed is rewrited to enhance its functionality

* e.g. 'rettype' => 'count' and 'retmode' => 'xml' are available

* Bio::FlatFile is improved to accept recent MEDLINE format

* Bio::KEGG::COMPOUND is enhanced to utilize REMARK field

* Bio::KEGG::API is fixed to skip filter when the value is Fixnum

* A number of minor bug fixes

http://cvs.open-bio.org/cgi-bin/viewcvs/viewcvs.cgi/bioruby/ChangeLog?rev=1.71&cvsroot=bioruby&content-type=text/vnd.viewcvs-markup

Three ways to install bioruby.

  1. tarball. http://bioruby.org/archive/bioruby-1.2.0.tar.gz
  2. cvs -d :pserver:cvs@code.open-bio.org:/home/repository/bioruby checkout
  3. gem install bio