Hatena::Groupbioruby

"aac".translate #=> "N" このページをアンテナに追加 RSSフィード

2007-05-21Ensembl API

Ensembl API for ruby (on ActiveRecord)

|  Ensembl API for ruby (on ActiveRecord) - "aac".translate #=> "N" を含むブックマーク はてなブックマーク -  Ensembl API for ruby (on ActiveRecord) - "aac".translate #=> "N"  Ensembl API for ruby (on ActiveRecord) - "aac".translate #=> "N" のブックマークコメント

Jan Aerts commited a Ensembl ruby API for the http://bioruby-annex.rubyforge.org.

screenshot

How to use script/example_emsembl.rb

  1. Provides a core db variable in a file (cf. coredb.rb).
$ENSEMBL_CORE_DATABASE = 'homo_sapiens_core_44_36f'
  1. Set a library path and required files.
bioruby-annex/ensembl-api% ruby -I lib -r coredb.rb -r lib/bio/api/enxembl script/example_ensembl.rb
--- !ruby/object:Bio::Api::Ensembl::Core::SeqRegion 
attributes:
  name: "1"
  coord_system_id: "17"
  length: "247249719"
  seq_region_id: "226034"
Number of simple features: 0
--- 
...
トラックバック - http://bioruby.g.hatena.ne.jp/nakao_mitsuteru/20070521