"aac".translate #=> "N"

Ensembl API for ruby (on ActiveRecord)

Ensembl, ActiveRecord |

Jan Aerts commited a Ensembl ruby API for the http://bioruby-annex.rubyforge.org.

• no title

How to use script/example_emsembl.rb

1. Provides a core db variable in a file (cf. coredb.rb).

$ENSEMBL_CORE_DATABASE = 'homo_sapiens_core_44_36f'

1. Set a library path and required files.

bioruby-annex/ensembl-api% ruby -I lib -r coredb.rb -r lib/bio/api/enxembl script/example_ensembl.rb
--- !ruby/object:Bio::Api::Ensembl::Core::SeqRegion 
attributes:
  name: "1"
  coord_system_id: "17"
  length: "247249719"
  seq_region_id: "226034"
Number of simple features: 0
--- 
...