Hatena::Groupbioruby

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2007-04-11

GO Database on ActiveRecord plugin released.

|  GO Database on ActiveRecord plugin released. - "aac".translate #=> "N" を含むブックマーク はてなブックマーク -  GO Database on ActiveRecord plugin released. - "aac".translate #=> "N"  GO Database on ActiveRecord plugin released. - "aac".translate #=> "N" のブックマークコメント

I released GO Database on ActiveRecord, an active record models for the GO Database at the BioRuby Rails Plugins. The GO Database is the backend RDB for Amigo, the gene ontology broswer. The plugin works as an alternative SQL query interface for the GO Database.

screenshot screenshot screenshot screenshot

To install the go_database Rails plugin, on a rails application directory,

% script/plugin source svn://rubyforge.org/var/svn/bioruby-annex/rails/plugins/
% script/plugin list
% script/plugin install go_database

.

RDoc manual is available.

% cd vendor/plugins/go_database
% rake rdoc

After that, open rdoc/index.html.

トラックバック - http://bioruby.g.hatena.ne.jp/nakao_mitsuteru/20070411

2007-04-10

UniProt on ActiveRecord plugin released

|  UniProt on ActiveRecord plugin released - "aac".translate #=> "N" を含むブックマーク はてなブックマーク -  UniProt on ActiveRecord plugin released - "aac".translate #=> "N"  UniProt on ActiveRecord plugin released - "aac".translate #=> "N" のブックマークコメント

I released UniProt on ActiveRrcord a rails plugin. The plugin distributed via subversion repository at BioRuby Rails Plugins (bioruby-annex).

screenshot screenshot screenshot

Add the bioruby-annex subversion repository to the plugin sources.

% script/plugin source svn://rubyforge.org/var/svn/bioruby-annex/rails/plugins/
% script/plugin list | egrep uniprot
uniprot           svn://rubyforge.org/var/svn/bioruby-annex/rails/plugins/uniprot/

Install the uniprot plugin form the bioruby-annex subversion repository.

% script/plugin install uniprot

Generate uniprot files.

% script/generate uniprot 
% script/generate uniprot add_uniprot_models

Build RDoc.

% cd vendor/plugins/uniprot
% rake rdoc

See the RDoc generated for more details of the models and schema.

トラックバック - http://bioruby.g.hatena.ne.jp/nakao_mitsuteru/20070410

2007-04-08

bioruby-annex launched.

|  bioruby-annex launched. - "aac".translate #=> "N" を含むブックマーク はてなブックマーク -  bioruby-annex launched. - "aac".translate #=> "N"  bioruby-annex launched. - "aac".translate #=> "N" のブックマークコメント

I launched bioruby-annex, an open repository for biological applications and rails plugins with bioruby at RubyForge.org. The repository used subversion to manage source codes so that users can use the "script/plugin install a-svn-url" mechanism.

screenshot

Install script usage intended,

% script/plugin install svn://rubyforge.org/var/svn/bioruby-annex/rails/plugins/${plugin_name}/trunk
トラックバック - http://bioruby.g.hatena.ne.jp/nakao_mitsuteru/20070408